Quick Comparison

Black Seed OilMagnesium L-Threonate
Half-Life6-8 hours (thymoquinone)2-3 hours (threonate carrier), but brain magnesium levels increase cumulatively
Typical DosageStandard: 1-3 teaspoons oil daily, or 500-1000 mg standardized extract (minimum 2% thymoquinone). Take with food. Cold-pressed oil retains more bioactives. Taste is peppery/bitter — capsules available for those who dislike the taste.Standard: 1500-2000 mg Magnesium L-Threonate daily (providing 144 mg elemental magnesium). Often split into a daytime dose and a pre-bed dose. The Magtein brand uses 2000 mg daily (667 mg three times).
AdministrationOral (oil, softgels, capsules). Cold-pressed oil preferred. Take with food.Oral (capsules, powder). The L-threonate form is specifically chosen for brain penetration.
Research Papers9 papers10 papers
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Mechanism of Action

Black Seed Oil

Thymoquinone is the primary bioactive, providing neuroprotection through multiple mechanisms: it scavenges reactive oxygen species (superoxide, hydroxyl radical, peroxynitrite) and upregulates Nrf2/ARE pathway, increasing glutathione (via GCLC, GSS), superoxide dismutase (SOD1/SOD2), and catalase. It inhibits NF-kB by preventing IkB-alpha degradation and blocking p65 nuclear translocation, reducing neuroinflammation and pro-inflammatory cytokine release. Thymoquinone inhibits acetylcholinesterase (AChE) at the peripheral anionic site, increasing synaptic acetylcholine. It modulates GABA-A receptors (positive allosteric modulation at benzodiazepine site), providing anxiolytic effects. Thymoquinone protects neurons from amyloid-beta toxicity by reducing oxidative stress and inhibiting beta-secretase (BACE1). It reduces tau hyperphosphorylation by inhibiting GSK-3beta and CDK5.

Magnesium L-Threonate

The L-threonate carrier forms stable complexes with magnesium and transports it across the blood-brain barrier via specific transporters more effectively than inorganic magnesium salts or other chelated forms. Once in the brain, magnesium acts as a voltage-dependent blocker of the NMDA receptor channel at the physiological magnesium binding site within the ion pore, preventing excessive calcium influx and glutamate-mediated excitotoxicity. Magnesium also serves as a cofactor for over 300 enzymes including those involved in neurotransmitter synthesis (tyrosine hydroxylase, glutamic acid decarboxylase), ATP production (creatine kinase, pyruvate kinase), and DNA/RNA polymerase. Elevated brain magnesium enhances synaptic density and plasticity in the hippocampus and prefrontal cortex, likely through CREB-mediated gene expression and increased density of postsynaptic AMPA receptors.

Risks & Safety

Black Seed Oil

Common

Mild gastrointestinal discomfort, burping.

Serious

May lower blood pressure and blood sugar — caution with relevant medications. May slow blood clotting.

Rare

Allergic reaction, contact dermatitis with topical use.

Magnesium L-Threonate

Common

Drowsiness (often desired for sleep), mild headache initially, gastrointestinal discomfort.

Serious

None documented at standard doses. Magnesium toxicity is not a concern with oral supplementation in people with normal kidney function.

Rare

Diarrhea (less common than with other magnesium forms).

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