Quick Comparison

Black Seed OilPQQ
Half-Life6-8 hours (thymoquinone)3-5 hours (plasma), but effects on mitochondrial biogenesis persist
Typical DosageStandard: 1-3 teaspoons oil daily, or 500-1000 mg standardized extract (minimum 2% thymoquinone). Take with food. Cold-pressed oil retains more bioactives. Taste is peppery/bitter — capsules available for those who dislike the taste.Standard: 10-20 mg daily. Often combined with CoQ10 (100-300 mg) for synergistic mitochondrial support. Higher doses (40 mg) are used in some research settings.
AdministrationOral (oil, softgels, capsules). Cold-pressed oil preferred. Take with food.Oral (capsules, softgels). Best absorbed on an empty stomach. BioPQQ is the most studied branded form.
Research Papers9 papers10 papers
Categories

Mechanism of Action

Black Seed Oil

Thymoquinone is the primary bioactive, providing neuroprotection through multiple mechanisms: it scavenges reactive oxygen species (superoxide, hydroxyl radical, peroxynitrite) and upregulates Nrf2/ARE pathway, increasing glutathione (via GCLC, GSS), superoxide dismutase (SOD1/SOD2), and catalase. It inhibits NF-kB by preventing IkB-alpha degradation and blocking p65 nuclear translocation, reducing neuroinflammation and pro-inflammatory cytokine release. Thymoquinone inhibits acetylcholinesterase (AChE) at the peripheral anionic site, increasing synaptic acetylcholine. It modulates GABA-A receptors (positive allosteric modulation at benzodiazepine site), providing anxiolytic effects. Thymoquinone protects neurons from amyloid-beta toxicity by reducing oxidative stress and inhibiting beta-secretase (BACE1). It reduces tau hyperphosphorylation by inhibiting GSK-3beta and CDK5.

PQQ

PQQ activates PGC-1alpha (peroxisome proliferator-activated receptor gamma coactivator 1-alpha), the master transcriptional regulator of mitochondrial biogenesis. PGC-1alpha coactivates NRF-1 and NRF-2, which drive expression of mitochondrial transcription factor A (TFAM) and nuclear-encoded mitochondrial genes—the process of creating new mitochondria in existing cells. This is unique among commercially available supplements. PQQ also provides antioxidant protection through extremely efficient redox cycling at the N5 position; it can undergo thousands of oxidation-reduction cycles before being exhausted, estimated at 5,000x the efficiency of vitamin C. PQQ activates the CREB (cAMP response element-binding protein) signaling pathway and may enhance NGF signaling, supporting BDNF expression, synaptic plasticity, and neuronal survival.

Risks & Safety

Black Seed Oil

Common

Mild gastrointestinal discomfort, burping.

Serious

May lower blood pressure and blood sugar — caution with relevant medications. May slow blood clotting.

Rare

Allergic reaction, contact dermatitis with topical use.

PQQ

Common

Very few — PQQ has an excellent safety profile at standard doses. Mild headache, fatigue initially.

Serious

No serious adverse effects documented.

Rare

Insomnia, irritability.

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